HL_8QBT_088

3D structure

PDB id

8QBT (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli ApdP-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUACGG

Length

6 nucleotides

Bulged bases

8QBT|1|i|A|344

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QBT_088 not in the Motif Atlas

Homologous match to HL_4LFB_009

Geometric discrepancy: 0.1178

The information below is about HL_4LFB_009

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

8QBT|1|i|C|342
8QBT|1|i|U|343
8QBT|1|i|A|344
8QBT|1|i|C|345
8QBT|1|i|G|346
8QBT|1|i|G|347

Current chains

Chain i

16S rRNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14

Chain P

Large ribosomal subunit protein bL19