HL_8QBT_100
3D structure
- PDB id
- 8QBT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli ApdP-stalled ribosomal complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAUGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 8QBT|1|i|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QBT_100 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.0843
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QBT|1|i|G|963
8QBT|1|i|A|964
8QBT|1|i|U|965
8QBT|1|i|G|966
8QBT|1|i|C|967
8QBT|1|i|A|968
8QBT|1|i|A|969
8QBT|1|i|C|970
8QBT|1|i|G|971
8QBT|1|i|C|972
Current chains
- Chain i
- 16S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain 6
- Transfer RNA; tRNA
- Chain q
- Small ribosomal subunit protein uS9
- Chain u
- Small ribosomal subunit protein uS13
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