HL_8QCQ_014

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8QCQ|1|A|G|458

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0606

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QCQ|1|A|G|457
8QCQ|1|A|G|458
8QCQ|1|A|A|459
8QCQ|1|A|C|460
8QCQ|1|A|C|461
8QCQ|1|A|A|462
8QCQ|1|A|U|463
8QCQ|1|A|C|464

Current chains

Chain A

23S rRNA

Nearby chains