8QCQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8QCQ_001 | 1/A/67:74 | No text annotation | geometric HL_4WF9_001 HL_08550.1 | |
| HL_8QCQ_002 | 1/A/87:95 | Pseudoknot geometry | homologous HL_4WF9_002 HL_00911.1 | |
| HL_8QCQ_003 | 1/A/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_8QCQ_004 | 1/A/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_8QCQ_005 | 1/A/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_8QCQ_006 | 1/A/197:204 | No text annotation | homologous HL_5J7L_139 NA | |
| HL_8QCQ_007 | 1/A/228:233 | No text annotation | homologous HL_4WF9_007 HL_51020.1 | |
| HL_8QCQ_008 | 1/A/249:255 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_8QCQ_009 | 1/A/283:288 | No text annotation | ||
| HL_8QCQ_010 | 1/A/349:356 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_8QCQ_011 | 1/A/363:367 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_8QCQ_012 | 1/A/371:379 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8QCQ_013 | 1/A/429:439 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8QCQ_014 | 1/A/457:464 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_8QCQ_015 | 1/A/509:514 | GNRA | homologous HL_7RQB_015 NA | |
| HL_8QCQ_016 | 1/A/534:539 | GNRA | homologous HL_7RQB_016 NA | |
| HL_8QCQ_017 | 1/A/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_8QCQ_018 | 1/A/610:619 | T-loop with 2 stacked bulged bases | geometric HL_4WF9_018 HL_33597.1 | |
| HL_8QCQ_019 | 1/A/656:662 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_8QCQ_020 | 1/A/675:680 | GNRA | homologous HL_7RQB_020 NA | |
| HL_8QCQ_021 | 1/A/687:693 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_8QCQ_022 | 1/A/759:766 | tRNA anticodon loop | geometric HL_5UD5_002 HL_68642.1 | |
| HL_8QCQ_023 | 1/A/791:800 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_8QCQ_024 | 1/A/826:832 | No text annotation | homologous HL_5J7L_156 NA | |
| HL_8QCQ_025 | 1/A/873:878 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_8QCQ_027 | 1/A/1001:1008 | GNRA | homologous HL_7RQB_027 NA | |
| HL_8QCQ_028 | 1/A/1024:1031 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_8QCQ_030 | 1/A/1262:1267 | GNRA | homologous HL_4WF9_031 HL_34789.1 | |
| HL_8QCQ_031 | 1/A/1320:1328 | No text annotation | homologous HL_7RQB_033 NA | |
| HL_8QCQ_032 | 1/A/1363:1369 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_8QCQ_033 | 1/A/1402:1407 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8QCQ_034 | 1/A/1428:1437 | No text annotation | homologous HL_7RQB_036 NA | |
| HL_8QCQ_035 | 1/A/1497:1508 | No text annotation | ||
| HL_8QCQ_036 | 1/A/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8QCQ_038 | 1/A/1613:1616 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_8QCQ_039 | 1/A/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_8QCQ_040 | 1/A/1675:1681 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8QCQ_041 | 1/A/1736:1741 | No text annotation | homologous HL_7RQB_042 NA | |
| HL_8QCQ_042 | 1/A/1764:1769 | No text annotation | homologous HL_7RQB_043 NA | |
| HL_8QCQ_043 | 1/A/1781:1785 | No text annotation | homologous HL_7RQB_044 NA | |
| HL_8QCQ_044 | 1/A/1806:1816 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8QCQ_045 | 1/A/1835:1840 | GNRA | homologous HL_7RQB_046 NA | |
| HL_8QCQ_046 | 1/A/1897:1902 | GNRA | geometric HL_4QLM_001 HL_34789.1 | |
| HL_8QCQ_047 | 1/A/1939:1949 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8QCQ_048 | 1/A/1978:1986 | No text annotation | homologous HL_7RQB_049 NA | |
| HL_8QCQ_049 | 1/A/2021:2025 | No text annotation | ||
| HL_8QCQ_050 | 1/A/2056:2065 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_8QCQ_052 | 1/A/2238:2244 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8QCQ_053 | 1/A/2277:2285 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8QCQ_054 | 1/A/2293:2305 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8QCQ_114 | 1/A/2333:2341 | No text annotation | homologous HL_9DFE_198 HL_02452.1 | |
| HL_8QCQ_056 | 1/A/2353:2360 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_8QCQ_057 | 1/A/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_8QCQ_058 | 1/A/2403:2408 | GNRA | homologous HL_7RQB_058 NA | |
| HL_8QCQ_059 | 1/A/2433:2442 | No text annotation | homologous HL_7RQB_059 NA | |
| HL_8QCQ_060 | 1/A/2500:2508 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_8QCQ_061 | 1/A/2557:2564 | GNRA variation | homologous HL_4WF9_057 HL_46665.1 | |
| HL_8QCQ_062 | 1/A/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8QCQ_063 | 1/A/2623:2628 | GNRA | homologous HL_5J7L_196 NA | |
| HL_8QCQ_064 | 1/A/2687:2692 | GNRA | geometric HL_4V9F_066 HL_34789.1 | |
| HL_8QCQ_065 | 1/A/2730:2735 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.1 | |
| HL_8QCQ_066 | 1/A/2774:2788 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8QCQ_067 | 1/A/2823:2828 | GNRA | geometric HL_6JQ5_004 NA | |
| HL_8QCQ_068 | 1/A/2844:2852 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8QCQ_069 | 1/A/2881:2886 | GNRA | homologous HL_5J7L_202 NA | |
| HL_8QCQ_110 | 1/B/32:46 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_8QCQ_070 | 1/B/36:42 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_8QCQ_071 | 1/B/84:88 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_8QCQ_072 | 1/a/14:24 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8QCQ_073 | 1/a/82:87 | No text annotation | ||
| HL_8QCQ_074 | 1/a/157:162 | GNRA | homologous HL_5J7L_003 NA | |
| HL_8QCQ_075 | 1/a/191:198 | No text annotation | ||
| HL_8QCQ_076 | 1/a/217:222 | UNCG | homologous HL_5J7L_005 NA | |
| HL_8QCQ_077 | 1/a/267:275 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_8QCQ_078 | 1/a/304:309 | GNRA | homologous HL_4LFB_007 HL_34789.1 | |
| HL_8QCQ_079 | 1/a/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8QCQ_080 | 1/a/350:355 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_8QCQ_081 | 1/a/387:392 | GNRA | homologous HL_5J7L_010 NA | |
| HL_8QCQ_082 | 1/a/425:434 | No text annotation | ||
| HL_8QCQ_115 | 1/a/470:480 | No text annotation | ||
| HL_8QCQ_083 | 1/a/472:478 | No text annotation | ||
| HL_8QCQ_084 | 1/a/531:536 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_8QCQ_085 | 1/a/626:632 | No text annotation | geometric HL_5NFV_001 HL_69752.3 | |
| HL_8QCQ_086 | 1/a/698:707 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_8QCQ_087 | 1/a/735:740 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8QCQ_088 | 1/a/795:805 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8QCQ_089 | 1/a/849:856 | No text annotation | ||
| HL_8QCQ_090 | 1/a/872:877 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_8QCQ_091 | 1/a/907:912 | GNRA | homologous HL_5J7L_020 NA | |
| HL_8QCQ_092 | 1/a/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_8QCQ_093 | 1/a/1022:1027 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_8QCQ_094 | 1/a/1037:1043 | No text annotation | geometric HL_8C3A_012 NA | |
| HL_8QCQ_095 | 1/a/1086:1091 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8QCQ_096 | 1/a/1099:1106 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_8QCQ_097 | 1/a/1143:1150 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_8QCQ_098 | 1/a/1174:1180 | GNRA | homologous HL_5J7L_026 NA | |
| HL_8QCQ_099 | 1/a/1274:1279 | GNRA | homologous HL_5J7L_027 NA | |
| HL_8QCQ_100 | 1/a/1323:1332 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_8QCQ_101 | 1/a/1365:1375 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_8QCQ_102 | 1/a/1459:1463 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.1 | |
| HL_8QCQ_103 | 1/a/1525:1530 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_8QCQ_104 | 1/w/13:23 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8QCQ_105 | 1/w/32:40 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_8QCQ_106 | 1/w/54:62 | T-loop with 2 stacked bulged bases | homologous HL_4YCO_003 HL_33597.1 | |
| HL_8QCQ_107 | 1/y/13:23 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8QCQ_108 | 1/y/32:40 | tRNA anticodon loop | homologous HL_4YCO_002 HL_81376.1 | |
| HL_8QCQ_109 | 1/y/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5HR7_006 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8QCQ_026 | No text annotation | ||
| HL_8QCQ_029 | No text annotation | ||
| HL_8QCQ_037 | No text annotation | ||
| HL_8QCQ_051 | No text annotation | ||
| HL_8QCQ_055 | No text annotation | ||
| HL_8QCQ_111 | No text annotation | ||
| HL_8QCQ_112 | No text annotation | ||
| HL_8QCQ_113 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8QCQ_001 | 1/A/24:30, 1/A/556:562 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_8QCQ_002 | 1/A/36:37, 1/A/489:491 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8QCQ_003 | 1/A/43:44, 1/A/481:483 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8QCQ_183 | 1/A/56:76, 1/A/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_8QCQ_004 | 1/A/81:85, 1/A/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_8QCQ_005 | 1/A/152:153, 1/A/175:177 | Single bulged A | homologous IL_4WF9_006 IL_14190.1 | |
| IL_8QCQ_006 | 1/A/186:187, 1/A/215:217 | Single stack bend | homologous IL_4WF9_007 IL_15011.1 | |
| IL_8QCQ_007 | 1/A/191:197, 1/A/204:211 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_8QCQ_008 | 1/A/241:248, 1/A/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_8QCQ_009 | 1/A/305:306, 1/A/410:413 | Major groove minor groove platform; mini C-loop | geometric IL_7A0S_068 IL_73108.1 | |
| IL_8QCQ_010 | 1/A/336:338, 1/A/387:391 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8QCQ_011 | 1/A/344:346, 1/A/359:360 | No text annotation | ||
| IL_8QCQ_012 | 1/A/528:531, 1/A/542:555 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_8QCQ_013 | 1/A/582:585, 1/A/598:601 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
| IL_8QCQ_014 | 1/A/608:610, 1/A/619:621 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_71625.1 | |
| IL_8QCQ_015 | 1/A/639:641, 1/A/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_8QCQ_016 | 1/A/650:654, 1/A/664:668 | AAA cross-strand stack | homologous IL_7RQB_016 NA | |
| IL_8QCQ_017 | 1/A/719:721, 1/A/853:855 | No text annotation | geometric IL_7RQB_017 NA | |
| IL_8QCQ_018 | 1/A/721:725, 1/A/846:853 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_8QCQ_019 | 1/A/744:745, 1/A/810:812 | Single bulged A | geometric IL_5J7L_261 NA | |
| IL_8QCQ_020 | 1/A/749:750, 1/A/775:777 | Single bulged G | homologous IL_5J7L_262 NA | |
| IL_8QCQ_021 | 1/A/750:754, 1/A/771:775 | Triple sheared | geometric IL_4V9F_027 IL_15190.1 | |
| IL_8QCQ_022 | 1/A/785:787, 1/A/804:805 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_8QCQ_023 | 1/A/822:824, 1/A/834:838 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_8QCQ_024 | 1/A/884:885, 1/A/986:988 | Single stack bend | homologous IL_7RQB_024 NA | |
| IL_8QCQ_025 | 1/A/891:894, 1/A/979:980 | Major groove platform; stack outside cWW | homologous IL_7A0S_023 IL_74641.1 | |
| IL_8QCQ_184 | 1/A/891:895, 1/A/977:980 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_8QCQ_026 | 1/A/894:895, 1/A/977:979 | 90 degree turn | geometric IL_7A0S_024 IL_79144.1 | |
| IL_8QCQ_027 | 1/A/899:900, 1/A/971:973 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_8QCQ_028 | 1/A/903:909, 1/A/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_4WF9_031 IL_94128.1 | |
| IL_8QCQ_029 | 1/A/909:910, 1/A/960:962 | Minor groove platform | geometric IL_7RQB_028 NA | |
| IL_8QCQ_030 | 1/A/911:915, 1/A/956:959 | C-loop | homologous IL_7RQB_029 NA | |
| IL_8QCQ_032 | 1/A/922:926, 1/A/945:949 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_8QCQ_033 | 1/A/927:928, 1/A/942:944 | Single bulged A | homologous IL_7RQB_033 NA | |
| IL_8QCQ_034 | 1/A/998:1000, 1/A/1009:1011 | No text annotation | homologous IL_7RQB_034 NA | |
| IL_8QCQ_035 | 1/A/1040:1042, 1/A/1205:1206 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_8QCQ_036 | 1/A/1044:1048, 1/A/1199:1203 | UAA/GAN | homologous IL_5J7L_277 NA | |
| IL_8QCQ_037 | 1/A/1050:1057, 1/A/1196:1197 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_8QCQ_038 | 1/A/1057:1059, 1/A/1195:1196 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8QCQ_039 | 1/A/1064:1070, 1/A/1186:1190 | No text annotation | geometric IL_7RQB_039 NA | |
| IL_8QCQ_040 | 1/A/1070:1076, 1/A/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_8QCQ_041 | 1/A/1077:1080, 1/A/1167:1169 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_8QCQ_042 | 1/A/1237:1239, 1/A/1287:1290 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_8QCQ_043 | 1/A/1243:1247, 1/A/1279:1283 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_8QCQ_044 | 1/A/1248:1255, 1/A/1274:1278 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8QCQ_045 | 1/A/1259:1261, 1/A/1268:1270 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_8QCQ_046 | 1/A/1302:1309, 1/A/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_8QCQ_047 | 1/A/1349:1352, 1/A/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_8QCQ_048 | 1/A/1358:1362, 1/A/1370:1372 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_8QCQ_049 | 1/A/1390:1394, 1/A/1415:1419 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_8QCQ_050 | 1/A/1396:1400, 1/A/1409:1413 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8QCQ_051 | 1/A/1448:1450, 1/A/1637:1638 | Minor groove platform | geometric IL_4V9F_034 IL_34520.1 | |
| IL_8QCQ_052 | 1/A/1455:1462, 1/A/1629:1632 | No text annotation | ||
| IL_8QCQ_053 | 1/A/1463:1467, 1/A/1625:1628 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_8QCQ_054 | 1/A/1478:1481, 1/A/1605:1609 | No text annotation | ||
| IL_8QCQ_055 | 1/A/1483:1486, 1/A/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_8QCQ_056 | 1/A/1488:1490, 1/A/1596:1597 | Major groove platform | geometric IL_3NKB_002 NA | |
| IL_8QCQ_057 | 1/A/1515:1518, 1/A/1567:1571 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8QCQ_058 | 1/A/1522:1525, 1/A/1560:1563 | Double sheared | geometric IL_5J7L_062 NA | |
| IL_8QCQ_060 | 1/A/1535:1537, 1/A/1545:1546 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8QCQ_061 | 1/A/1573:1576, 1/A/1590:1594 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_8QCQ_062 | 1/A/1696:1701, 1/A/2033:2035 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_8QCQ_185 | 1/A/1708:1710, 1/A/2024:2026 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
| IL_8QCQ_186 | 1/A/1711:1714, 1/A/2022:2023 | Major groove platform; stack outside cWW | geometric IL_8VTW_065 NA | |
| IL_8QCQ_187 | 1/A/1711:1719, 1/A/2019:2023 | No text annotation | geometric IL_5J7L_386 NA | |
| IL_8QCQ_188 | 1/A/1714:1719, 1/A/2019:2022 | Intercalated tWH | homologous IL_5J7L_307 NA | |
| IL_8QCQ_063 | 1/A/1731:1736, 1/A/1741:1747 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_8QCQ_064 | 1/A/1756:1761, 1/A/1772:1776 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_8QCQ_065 | 1/A/1799:1800, 1/A/2009:2011 | Single bulged A | homologous IL_5J7L_312 NA | |
| IL_8QCQ_066 | 1/A/1827:1833, 1/A/1842:1850 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_8QCQ_067 | 1/A/1866:1869, 1/A/1931:1932 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8QCQ_068 | 1/A/1870:1871, 1/A/1927:1930 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8QCQ_069 | 1/A/1875:1878, 1/A/1922:1923 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8QCQ_070 | 1/A/1880:1884, 1/A/1916:1920 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_8QCQ_071 | 1/A/1885:1889, 1/A/1911:1915 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_8QCQ_072 | 1/A/1893:1896, 1/A/1903:1907 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8QCQ_073 | 1/A/1962:1963, 1/A/1993:1996 | Bulged stacked bases | geometric IL_7RQB_076 NA | |
| IL_8QCQ_074 | 1/A/1963:1974, 1/A/1990:1993 | No text annotation | homologous IL_4WF9_077 IL_84014.1 | |
| IL_8QCQ_075 | 1/A/2079:2081, 1/A/2646:2647 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_8QCQ_076 | 1/A/2083:2085, 1/A/2641:2644 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_8QCQ_077 | 1/A/2096:2098, 1/A/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_8QCQ_078 | 1/A/2099:2100, 1/A/2467:2470 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_8QCQ_079 | 1/A/2110:2112, 1/A/2265:2268 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_8QCQ_080 | 1/A/2124:2126, 1/A/2221:2223 | Isolated non-canonical cWW pair | geometric IL_4JGN_004 NA | |
| IL_8QCQ_081 | 1/A/2231:2233, 1/A/2249:2250 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8QCQ_082 | 1/A/2326:2328, 1/A/2346:2350 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8QCQ_083 | 1/A/2379:2382, 1/A/2393:2396 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8QCQ_084 | 1/A/2430:2432, 1/A/2443:2444 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_8QCQ_085 | 1/A/2482:2483, 1/A/2527:2529 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_8QCQ_086 | 1/A/2483:2484, 1/A/2525:2527 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_8QCQ_087 | 1/A/2486:2488, 1/A/2522:2523 | Major groove platform | homologous IL_4WF9_091 IL_48076.7 | |
| IL_8QCQ_088 | 1/A/2488:2490, 1/A/2518:2522 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
| IL_8QCQ_089 | 1/A/2495:2499, 1/A/2509:2513 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_8QCQ_090 | 1/A/2536:2537, 1/A/2609:2611 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_8QCQ_091 | 1/A/2539:2541, 1/A/2603:2607 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_8QCQ_092 | 1/A/2541:2542, 1/A/2600:2603 | No text annotation | geometric IL_4WF9_096 IL_44609.1 | |
| IL_8QCQ_093 | 1/A/2551:2552, 1/A/2569:2572 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
| IL_8QCQ_094 | 1/A/2620:2621, 1/A/2630:2632 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8QCQ_095 | 1/A/2665:2669, 1/A/2803:2811 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_8QCQ_096 | 1/A/2681:2687, 1/A/2692:2697 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_8QCQ_097 | 1/A/2709:2713, 1/A/2754:2756 | C-loop | homologous IL_5J7L_347 NA | |
| IL_8QCQ_098 | 1/A/2716:2720, 1/A/2747:2751 | UAA/GAN related, with intercalation | homologous IL_5J7L_348 NA | |
| IL_8QCQ_099 | 1/A/2724:2725, 1/A/2740:2743 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8QCQ_100 | 1/A/2766:2771, 1/A/2791:2796 | UAA/GAN with extra cWW | homologous IL_4WF9_104 IL_91079.1 | |
| IL_8QCQ_101 | 1/A/2863:2864, 1/A/2903:2905 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_8QCQ_102 | 1/A/2868:2870, 1/A/2896:2899 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_8QCQ_103 | 1/A/2872:2877, 1/A/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_8QCQ_104 | 1/B/15:16, 1/B/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_8QCQ_105 | 1/B/21:26, 1/B/57:58 | No text annotation | ||
| IL_8QCQ_189 | 1/B/21:27, 1/B/53:58 | No text annotation | ||
| IL_8QCQ_106 | 1/B/26:27, 1/B/53:57 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_8QCQ_107 | 1/B/28:29, 1/B/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_8QCQ_108 | 1/B/32:36, 1/B/42:46 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8QCQ_109 | 1/B/69:77, 1/B/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_8QCQ_110 | 1/B/78:80, 1/B/92:94 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.1 | |
| IL_8QCQ_190 | 1/a/31:34, 1/a/561:563 | Isolated non-canonical cWW pair | geometric IL_4YHW_001 NA | |
| IL_8QCQ_111 | 1/a/32:34, 1/a/561:562 | Single bulged G | homologous IL_5J7L_001 NA | |
| IL_8QCQ_112 | 1/a/46:47, 1/a/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8QCQ_113 | 1/a/49:54, 1/a/367:369 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8QCQ_114 | 1/a/56:58, 1/a/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_8QCQ_115 | 1/a/65:68, 1/a/101:102 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_8QCQ_116 | 1/a/68:71, 1/a/98:101 | No text annotation | ||
| IL_8QCQ_194 | 1/a/74:78, 1/a/91:95 | No text annotation | ||
| IL_8QCQ_119 | 1/a/123:125, 1/a/241:244 | No text annotation | ||
| IL_8QCQ_120 | 1/a/125:130, 1/a/239:241 | No text annotation | geometric IL_4V9F_072 IL_75527.1 | |
| IL_8QCQ_121 | 1/a/131:135, 1/a/235:238 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_8QCQ_191 | 1/a/144:152, 1/a/167:176 | No text annotation | ||
| IL_8QCQ_125 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_8QCQ_195 | 1/a/257:260, 1/a/282:283 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8QCQ_127 | 1/a/300:301, 1/a/312:316 | C-loop | homologous IL_6CZR_125 NA | |
| IL_8QCQ_128 | 1/a/375:377, 1/a/400:401 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8QCQ_129 | 1/a/379:383, 1/a/397:398 | C-loop | homologous IL_5J7L_018 NA | |
| IL_8QCQ_130 | 1/a/383:384, 1/a/395:397 | Single bulged G | geometric IL_5J7L_019 NA | |
| IL_8QCQ_131 | 1/a/416:425, 1/a/434:442 | No text annotation | ||
| IL_8QCQ_132 | 1/a/454:458, 1/a/492:497 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_8QCQ_133 | 1/a/458:464, 1/a/486:492 | No text annotation | ||
| IL_8QCQ_192 | 1/a/458:467, 1/a/483:492 | No text annotation | ||
| IL_8QCQ_134 | 1/a/464:467, 1/a/483:486 | Tandem non-canonical cWW pairs | geometric IL_5TBW_041 NA | |
| IL_8QCQ_196 | 1/a/512:520, 1/a/549:551 | No text annotation | ||
| IL_8QCQ_137 | 1/a/524:530, 1/a/537:545 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8QCQ_138 | 1/a/578:584, 1/a/890:891 | No text annotation | homologous IL_4LFB_022 IL_20847.1 | |
| IL_8QCQ_139 | 1/a/589:593, 1/a/766:770 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_8QCQ_140 | 1/a/603:605, 1/a/653:654 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8QCQ_141 | 1/a/606:607, 1/a/649:652 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_8QCQ_197 | 1/a/613:621, 1/a/637:643 | No text annotation | ||
| IL_8QCQ_145 | 1/a/663:664, 1/a/760:763 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 NA | |
| IL_8QCQ_146 | 1/a/666:667, 1/a/756:758 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_8QCQ_147 | 1/a/671:675, 1/a/749:752 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8QCQ_193 | 1/a/682:686, 1/a/722:726 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_8QCQ_149 | 1/a/693:697, 1/a/708:715 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8QCQ_150 | 1/a/783:787, 1/a/813:814 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_8QCQ_151 | 1/a/788:792, 1/a/808:812 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_8QCQ_152 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_8QCQ_153 | 1/a/932:933, 1/a/1402:1404 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_8QCQ_154 | 1/a/935:937, 1/a/1399:1400 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_8QCQ_155 | 1/a/943:945, 1/a/1389:1393 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8QCQ_156 | 1/a/963:964, 1/a/1235:1237 | Minor groove platform | homologous IL_4LFB_038 IL_34520.1 | |
| IL_8QCQ_157 | 1/a/1003:1007, 1/a/1054:1055 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_8QCQ_158 | 1/a/1008:1009, 1/a/1051:1053 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_8QCQ_160 | 1/a/1058:1060, 1/a/1217:1218 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_8QCQ_161 | 1/a/1062:1066, 1/a/1213:1215 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_8QCQ_162 | 1/a/1067:1068, 1/a/1208:1212 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_8QCQ_163 | 1/a/1070:1071, 1/a/1204:1206 | Single bulged A | geometric IL_5J7L_049 NA | |
| IL_8QCQ_164 | 1/a/1071:1073, 1/a/1202:1204 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_8QCQ_165 | 1/a/1134:1137, 1/a/1154:1158 | Minor groove platform | homologous IL_6CZR_158 NA | |
| IL_8QCQ_166 | 1/a/1139:1142, 1/a/1151:1152 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8QCQ_167 | 1/a/1167:1170, 1/a/1184:1190 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_8QCQ_168 | 1/a/1256:1262, 1/a/1293:1299 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8QCQ_169 | 1/a/1264:1267, 1/a/1286:1291 | 180 degree turn | homologous IL_4LFB_052 IL_08849.1 | |
| IL_8QCQ_170 | 1/a/1268:1272, 1/a/1281:1285 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8QCQ_171 | 1/a/1312:1317, 1/a/1338:1343 | No text annotation | geometric IL_4LFB_055 IL_57885.1 | |
| IL_8QCQ_172 | 1/a/1408:1410, 1/a/1511:1514 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_8QCQ_173 | 1/a/1410:1413, 1/a/1507:1511 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8QCQ_174 | 1/a/1414:1416, 1/a/1504:1506 | Isolated non-canonical cWW pair | geometric IL_3GM7_005 IL_01003.1 | |
| IL_8QCQ_175 | 1/a/1416:1418, 1/a/1501:1504 | Decoding loop related | geometric IL_3C3Z_002 IL_29925.1 | |
| IL_8QCQ_176 | 1/a/1421:1423, 1/a/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8QCQ_177 | 1/a/1425:1428, 1/a/1491:1494 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8QCQ_178 | 1/a/1433:1436, 1/a/1483:1486 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8QCQ_179 | 1/a/1439:1444, 1/a/1476:1480 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_8QCQ_180 | 1/a/1444:1446, 1/a/1474:1476 | Isolated non-canonical cWW pair | geometric IL_4LFB_063 IL_01003.1 | |
| IL_8QCQ_181 | 1/a/1449:1452, 1/a/1469:1471 | Isolated tHS basepair with bulges | geometric IL_5J7L_325 NA | |
| IL_8QCQ_182 | 1/a/1454:1457, 1/a/1465:1467 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8QCQ_031 | Isolated cWS basepair | ||
| IL_8QCQ_059 | No text annotation | ||
| IL_8QCQ_117 | No text annotation | ||
| IL_8QCQ_118 | No text annotation | ||
| IL_8QCQ_122 | Isolated cWH basepair | ||
| IL_8QCQ_123 | Isolated non-canonical cWW pair | ||
| IL_8QCQ_124 | Isolated non-canonical cWW pair | ||
| IL_8QCQ_126 | No text annotation | ||
| IL_8QCQ_135 | No text annotation | ||
| IL_8QCQ_136 | No text annotation | ||
| IL_8QCQ_142 | Tandem non-canonical cWW pairs | ||
| IL_8QCQ_143 | No text annotation | ||
| IL_8QCQ_144 | Intercalated cWW | ||
| IL_8QCQ_148 | No text annotation | ||
| IL_8QCQ_159 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8QCQ_020 | 1/A/30:31, 1/A/521:528, 1/A/555:556 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8QCQ_021 | 1/A/30:31, 1/A/521:531, 1/A/542:556 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_8QCQ_022 | 1/A/32:35, 1/A/492:508, 1/A/515:520 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_8QCQ_001 | 1/A/56:67, 1/A/74:76, 1/A/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_8QCQ_023 | 1/A/272:276, 1/A/295:302, 1/A/416:417 | No text annotation | homologous J3_4WF9_022 J3_97971.2 | |
| J3_8QCQ_024 | 1/A/340:344, 1/A/360:369, 1/A/381:385 | No text annotation | homologous J3_9DFE_006 J3_77124.1 | |
| J3_8QCQ_002 | 1/A/730:736, 1/A/820:822, 1/A/838:841 | No text annotation | homologous J3_7RQB_004 NA | |
| J3_8QCQ_003 | 1/A/745:747, 1/A/779:783, 1/A/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8QCQ_004 | 1/A/1337:1342, 1/A/1670:1672, 1/A/1684:1687 | No text annotation | homologous J3_7RQB_007 NA | |
| J3_8QCQ_005 | 1/A/1344:1348, 1/A/1650:1656, 1/A/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_8QCQ_025 | 1/A/1383:1389, 1/A/1420:1424, 1/A/1441:1442 | No text annotation | homologous J3_7A0S_018 J3_94309.1 | |
| J3_8QCQ_026 | 1/A/1470:1475, 1/A/1612:1613, 1/A/1616:1622 | No text annotation | homologous J3_9DFE_013 J3_34864.3 | |
| J3_8QCQ_006 | 1/A/2120:2122, 1/A/2225:2230, 1/A/2251:2257 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_8QCQ_027 | 1/A/2311:2313, 1/A/2413:2424, 1/A/2450:2456 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8QCQ_007 | 1/A/2324:2326, 1/A/2350:2352, 1/A/2361:2366 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_8QCQ_008 | 1/A/2546:2549, 1/A/2574:2576, 1/A/2590:2596 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_8QCQ_009 | 1/A/2818:2820, 1/A/2831:2836, 1/A/2914:2918 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_8QCQ_010 | 1/A/2838:2840, 1/A/2856:2861, 1/A/2907:2912 | No text annotation | ||
| J3_8QCQ_011 | 1/B/9:14, 1/B/66:68, 1/B/104:107 | No text annotation | ||
| J3_8QCQ_028 | 1/a/48:49, 1/a/369:375, 1/a/401:403 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8QCQ_029 | 1/a/48:54, 1/a/367:375, 1/a/401:403 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_8QCQ_030 | 1/a/595:597, 1/a/660:663, 1/a/763:764 | No text annotation | geometric J3_6CZR_016 NA | |
| J3_8QCQ_031 | 1/a/595:597, 1/a/660:664, 1/a/760:764 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8QCQ_032 | 1/a/681:682, 1/a/726:734, 1/a/741:743 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_8QCQ_012 | 1/a/835:838, 1/a/867:871, 1/a/878:884 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8QCQ_013 | 1/a/946:949, 1/a/1353:1359, 1/a/1381:1388 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8QCQ_014 | 1/a/953:956, 1/a/1244:1246, 1/a/1346:1349 | No text annotation | homologous J3_5J7L_005 NA | |
| J3_8QCQ_015 | 1/a/965:972, 1/a/983:994, 1/a/1230:1234 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_8QCQ_016 | 1/a/1000:1003, 1/a/1055:1057, 1/a/1219:1224 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_8QCQ_033 | 1/a/1000:1007, 1/a/1054:1057, 1/a/1219:1224 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8QCQ_034 | 1/a/1013:1018, 1/a/1031:1037, 1/a/1043:1047 | No text annotation | ||
| J3_8QCQ_017 | 1/a/1073:1078, 1/a/1117:1123, 1/a/1196:1202 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8QCQ_035 | 1/a/1083:1084, 1/a/1093:1096, 1/a/1109:1112 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8QCQ_018 | 1/a/1126:1128, 1/a/1164:1167, 1/a/1190:1193 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8QCQ_036 | 1/a/1126:1128, 1/a/1164:1170, 1/a/1184:1193 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_8QCQ_019 | 1/a/1246:1250, 1/a/1305:1312, 1/a/1343:1346 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_8QCQ_001 | 1/A/271:272, 1/A/417:422, 1/A/446:453, 1/A/468:471 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_8QCQ_002 | 1/A/340:344, 1/A/360:363, 1/A/367:369, 1/A/381:385 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_8QCQ_003 | 1/A/645:648, 1/A/670:674, 1/A/681:684, 1/A/696:703 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8QCQ_004 | 1/A/1310:1315, 1/A/1333:1334, 1/A/1690:1693, 1/A/2038:2039 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_8QCQ_005 | 1/A/1349:1353, 1/A/1377:1382, 1/A/1443:1444, 1/A/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_8QCQ_006 | 1/A/1352:1353, 1/A/1377:1382, 1/A/1443:1444, 1/A/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_8QCQ_007 | 1/A/1491:1492, 1/A/1513:1514, 1/A/1572:1573, 1/A/1594:1595 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_8QCQ_008 | 1/A/1801:1805, 1/A/1817:1821, 1/A/1856:1859, 1/A/2004:2008 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8QCQ_009 | 1/A/1862:1864, 1/A/1934:1935, 1/A/1953:1962, 1/A/1996:2001 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8QCQ_010 | 1/A/2314:2318, 1/A/2372:2376, 1/A/2399:2401, 1/A/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_8QCQ_011 | 1/A/2672:2675, 1/A/2703:2705, 1/A/2760:2764, 1/A/2798:2800 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_8QCQ_012 | 1/a/38:42, 1/a/410:451, 1/a/500:509, 1/a/554:557 | No text annotation | ||
| J4_8QCQ_013 | 1/a/113:121, 1/a/246:248, 1/a/294:297, 1/a/319:320 | No text annotation | ||
| J4_8QCQ_018 | 1/a/141:143, 1/a/177:183, 1/a/206:212, 1/a/227:229 | No text annotation | ||
| J4_8QCQ_015 | 1/a/584:586, 1/a/773:778, 1/a/819:830, 1/a/889:890 | No text annotation | homologous J4_4LFB_003 J4_14595.1 | |
| J4_8QCQ_016 | 1/w/7:10, 1/w/26:28, 1/w/44:50, 1/w/66:67 | tRNA junction | homologous J4_1H4S_001 J4_58311.1 | |
| J4_8QCQ_017 | 1/y/7:10, 1/y/26:28, 1/y/44:50, 1/y/66:67 | tRNA junction | homologous J4_7MRL_001 NA | |
| J5_8QCQ_001 | 1/A/47:54, 1/A/115:120, 1/A/129:130, 1/A/149:151, 1/A/178:180 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8QCQ_002 | 1/A/271:276, 1/A/295:302, 1/A/416:422, 1/A/446:453, 1/A/468:471 | No text annotation | ||
| J5_8QCQ_003 | 1/A/577:579, 1/A/604:608, 1/A/621:623, 1/A/1301:1302, 1/A/2046:2047 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_8QCQ_004 | 1/A/628:633, 1/A/715:718, 1/A/856:859, 1/A/1236:1237, 1/A/1290:1296 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_8QCQ_005 | 1/A/1719:1727, 1/A/1751:1752, 1/A/1780:1781, 1/A/1785:1793, 1/A/2017:2019 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_8QCQ_006 | 1/A/2086:2093, 1/A/2475:2482, 1/A/2529:2536, 1/A/2611:2617, 1/A/2635:2640 | No text annotation | ||
| J5_8QCQ_007 | 1/A/2103:2106, 1/A/2272:2275, 1/A/2287:2288, 1/A/2310:2311, 1/A/2456:2464 | No text annotation | homologous J5_9DFE_007 J5_39529.2 | |
| J5_8QCQ_008 | 1/a/60:63, 1/a/104:111, 1/a/322:324, 1/a/345:347, 1/a/358:362 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_8QCQ_001 | 1/A/45:46, 1/A/181:186, 1/A/217:227, 1/A/234:238, 1/A/265:269, 1/A/473:480 | No text annotation | ||
| J6_8QCQ_002 | 1/A/2103:2106, 1/A/2272:2275, 1/A/2287:2288, 1/A/2310:2313, 1/A/2413:2424, 1/A/2450:2464 | No text annotation | ||
| J7_8QCQ_001 | 1/A/8:15, 1/A/571:577, 1/A/2047:2052, 1/A/2069:2072, 1/A/2654:2659, 1/A/2817:2818, 1/A/2918:2919 | No text annotation | ||
| J7_8QCQ_002 | 1/A/864:869, 1/A/882:883, 1/A/989:992, 1/A/1017:1022, 1/A/1033:1037, 1/A/1209:1210, 1/A/1226:1231 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J4_8QCQ_014 | No text annotation |
Coloring options: