HL_8QCQ_024

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UGAAAUG

Length

7 nucleotides

Bulged bases

8QCQ|1|A|A|828, 8QCQ|1|A|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_024 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0347

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8QCQ|1|A|U|826
8QCQ|1|A|G|827
8QCQ|1|A|A|828
8QCQ|1|A|A|829
8QCQ|1|A|A|830
8QCQ|1|A|U|831
8QCQ|1|A|G|832

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2