HL_8QCQ_034

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8QCQ|1|A|U|1435, 8QCQ|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1073

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8QCQ|1|A|G|1428
8QCQ|1|A|U|1429
8QCQ|1|A|U|1430
8QCQ|1|A|G|1431
8QCQ|1|A|A|1432
8QCQ|1|A|U|1433
8QCQ|1|A|A|1434
8QCQ|1|A|U|1435
8QCQ|1|A|U|1436
8QCQ|1|A|C|1437

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

Large ribosomal subunit protein uL23