HL_8QCQ_039

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8QCQ|1|A|A|1659, 8QCQ|1|A|A|1661, 8QCQ|1|A|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0472

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8QCQ|1|A|C|1657
8QCQ|1|A|G|1658
8QCQ|1|A|A|1659
8QCQ|1|A|C|1660
8QCQ|1|A|A|1661
8QCQ|1|A|C|1662
8QCQ|1|A|A|1663
8QCQ|1|A|G|1664

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain S

50S ribosomal protein L22