HL_8QCQ_048

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8QCQ|1|A|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0539

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

8QCQ|1|A|G|1978
8QCQ|1|A|G|1979
8QCQ|1|A|U|1980
8QCQ|1|A|A|1981
8QCQ|1|A|A|1982
8QCQ|1|A|G|1983
8QCQ|1|A|U|1984
8QCQ|1|A|U|1985
8QCQ|1|A|C|1986

Current chains

Chain A

23S rRNA

Nearby chains

Chain K

50S ribosomal protein L14

Chain a

Small subunit ribosomal RNA; SSU rRNA