HL_8QCQ_068

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

8QCQ|1|A|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_068 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.0799

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8QCQ|1|A|A|2844
8QCQ|1|A|A|2845
8QCQ|1|A|A|2846
8QCQ|1|A|G|2847
8QCQ|1|A|A|2848
8QCQ|1|A|U|2849
8QCQ|1|A|G|2850
8QCQ|1|A|A|2851
8QCQ|1|A|U|2852

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17