HL_8QCQ_083

3D structure

PDB id

8QCQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

B. subtilis ApdA-stalled ribosomal complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QCQ_083 not in the Motif Atlas

Geometric match to HL_9E6Q_004

Geometric discrepancy: 0.3699

The information below is about HL_9E6Q_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8QCQ|1|a|C|472
8QCQ|1|a|G|473
8QCQ|1|a|A|474
8QCQ|1|a|A|475
8QCQ|1|a|U|476
8QCQ|1|a|A|477
8QCQ|1|a|G|478

Current chains

Chain a

16S rRNA

Nearby chains