HL_8QFD_007

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8QFD|1|5|G|227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_007 not in the Motif Atlas

Homologous match to HL_5TBW_007

Geometric discrepancy: 0.1369

The information below is about HL_5TBW_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8QFD|1|5|G|225
8QFD|1|5|U|226
8QFD|1|5|G|227
8QFD|1|5|U|228
8QFD|1|5|G|229
8QFD|1|5|A|230
8QFD|1|5|G|231
8QFD|1|5|G|232
8QFD|1|5|C|233

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain Y

60S ribosomal protein L26