HL_8QFD_020
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CGCCGGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_020 not in the Motif Atlas
- Geometric match to HL_4WT8_234
- Geometric discrepancy: 0.366
- The information below is about HL_4WT8_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_96927.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8QFD|1|5|C|1466
8QFD|1|5|G|1467
8QFD|1|5|C|1468
8QFD|1|5|C|1469
8QFD|1|5|G|1479
8QFD|1|5|G|1480
8QFD|1|5|G|1481
8QFD|1|5|G|1482
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain a
- 60S ribosomal protein L27a
- Chain b
- 60S ribosomal protein L29
- Chain o
- 60S ribosomal protein L36a
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