HL_8QFD_024

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8QFD|1|5|C|1668, 8QFD|1|5|A|1671

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_024 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0717

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8QFD|1|5|C|1667
8QFD|1|5|C|1668
8QFD|1|5|U|1669
8QFD|1|5|C|1670
8QFD|1|5|A|1671
8QFD|1|5|G|1672

Current chains

Chain 5

28S rRNA

Nearby chains

Chain a

60S ribosomal protein L27a

Chain b

60S ribosomal protein L29

Chain o

60S ribosomal protein L36a