HL_8QFD_026
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUGGCGUG
- Length
- 8 nucleotides
- Bulged bases
- 8QFD|1|5|G|1813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_026 not in the Motif Atlas
- Geometric match to HL_2Y9H_005
- Geometric discrepancy: 0.2255
- The information below is about HL_2Y9H_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_44506.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8QFD|1|5|C|1808
8QFD|1|5|U|1809
8QFD|1|5|G|1810
8QFD|1|5|G|1811
8QFD|1|5|C|1812
8QFD|1|5|G|1813
8QFD|1|5|U|1814
8QFD|1|5|G|1815
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain T
- 60S ribosomal protein L21
- Chain b
- 60S ribosomal protein L29
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