HL_8QFD_043
3D structure
- PDB id
- 8QFD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- UFL1 E3 ligase bound 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- UGAACAG
- Length
- 7 nucleotides
- Bulged bases
- 8QFD|1|5|C|2806
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QFD_043 not in the Motif Atlas
- Homologous match to HL_5TBW_042
- Geometric discrepancy: 0.0796
- The information below is about HL_5TBW_042
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8QFD|1|5|U|2802
8QFD|1|5|G|2803
8QFD|1|5|A|2804
8QFD|1|5|A|2805
8QFD|1|5|C|2806
8QFD|1|5|A|2807
8QFD|1|5|G|2808
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
Coloring options: