HL_8QFD_052

3D structure

PDB id

8QFD (explore in PDB, NAKB, or RNA 3D Hub)

Description

UFL1 E3 ligase bound 60S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8QFD|1|5|A|3876, 8QFD|1|5|A|3877, 8QFD|1|5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QFD_052 not in the Motif Atlas

Homologous match to HL_5TBW_051

Geometric discrepancy: 0.0656

The information below is about HL_5TBW_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8QFD|1|5|G|3873
8QFD|1|5|G|3874
8QFD|1|5|G|3875
8QFD|1|5|A|3876
8QFD|1|5|A|3877
8QFD|1|5|C|3878
8QFD|1|5|G|3879
8QFD|1|5|G|3880
8QFD|1|5|G|3881
8QFD|1|5|C|3882

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain e

60S ribosomal protein L32