HL_8QO9_006

3D structure

PDB id

8QO9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a human spliceosomal B complex protomer

Experimental method

ELECTRON MICROSCOPY

Resolution

5.29 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8QO9|1|6|C|11

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QO9_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.222

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8QO9|1|6|C|8
8QO9|1|6|U|9
8QO9|1|6|U|10
8QO9|1|6|C|11
8QO9|1|6|G|12
8QO9|1|6|G|13

Current chains

Chain 6

U6 snRNA

Nearby chains

Chain T

Transcription elongation regulator 1