HL_8QOA_008

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0692

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8QOA|1|A|A|320
8QOA|1|A|A|321
8QOA|1|A|C|322
8QOA|1|A|U|323
8QOA|1|A|G|324
8QOA|1|A|A|325
8QOA|1|A|G|326
8QOA|1|A|A|327
8QOA|1|A|C|328
8QOA|1|A|A|329
8QOA|1|A|C|330
8QOA|1|A|G|331
8QOA|1|A|G|332
8QOA|1|A|U|333

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20