3D structure

PDB id
8QOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SecM-stalled Escherichia coli 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
8QOA|1|a|G|329, 8QOA|1|a|A|330, 8QOA|1|a|C|331
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QOA_049 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.0708
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

8QOA|1|a|G|327
8QOA|1|a|U|328
8QOA|1|a|G|329
8QOA|1|a|A|330
8QOA|1|a|C|331
8QOA|1|a|A|332
8QOA|1|a|G|333
8QOA|1|a|C|334
8QOA|1|a|C|335

Current chains

Chain a
23S rRNA

Nearby chains

Chain e
Large ribosomal subunit protein uL4
Chain t
Large ribosomal subunit protein uL24

Coloring options:


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