HL_8QOA_087

3D structure

PDB id

8QOA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SecM-stalled Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUAAUCG

Length

7 nucleotides

Bulged bases

8QOA|1|a|A|2211, 8QOA|1|a|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOA_087 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.0729

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8QOA|1|a|C|2209
8QOA|1|a|U|2210
8QOA|1|a|A|2211
8QOA|1|a|A|2212
8QOA|1|a|U|2213
8QOA|1|a|C|2214
8QOA|1|a|G|2215

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2