HL_8QOI_021
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- CCUCUCCAGUCCG
- Length
- 13 nucleotides
- Bulged bases
- 8QOI|1|L5|C|1442, 8QOI|1|L5|A|1443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_021 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3546
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QOI|1|L5|C|1436
8QOI|1|L5|C|1437
8QOI|1|L5|U|1438
8QOI|1|L5|C|1439
8QOI|1|L5|U|1440
8QOI|1|L5|C|1441
8QOI|1|L5|C|1442
8QOI|1|L5|A|1443
8QOI|1|L5|G|1444
8QOI|1|L5|U|1445
8QOI|1|L5|C|1446
8QOI|1|L5|C|1447
8QOI|1|L5|G|1448
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LC
- Large ribosomal subunit protein uL4
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LQ
- 60S ribosomal protein L18
- Chain Lb
- 60S ribosomal protein L29
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