HL_8QOI_039

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_039 not in the Motif Atlas

Geometric match to HL_6ASO_001

Geometric discrepancy: 0.3334

The information below is about HL_6ASO_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8QOI|1|L5|C|2561
8QOI|1|L5|G|2562
8QOI|1|L5|C|2563
8QOI|1|L5|G|2564
8QOI|1|L5|A|2565
8QOI|1|L5|G|2566

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains