HL_8QOI_042

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_042 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.515

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8QOI|1|L5|G|2664
8QOI|1|L5|U|2665
8QOI|1|L5|U|2666
8QOI|1|L5|C|2667
8QOI|1|L5|G|2668
8QOI|1|L5|C|2669
8QOI|1|L5|C|2670

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lc

60S ribosomal protein L30

Chain Lp

60S ribosomal protein L37a