3D structure

PDB id
8QOI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
Experimental method
ELECTRON MICROSCOPY
Resolution
1.9 Å

Loop

Sequence
UGAAC(A2M)G
Length
7 nucleotides
Bulged bases
8QOI|1|L5|C|2814
QA status
Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QOI_046 not in the Motif Atlas
Homologous match to HL_5TBW_042
Geometric discrepancy: 0.0698
The information below is about HL_5TBW_042
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8QOI|1|L5|U|2810
8QOI|1|L5|G|2811
8QOI|1|L5|A|2812
8QOI|1|L5|A|2813
8QOI|1|L5|C|2814
8QOI|1|L5|A2M|2815
8QOI|1|L5|G|2816

Current chains

Chain L5
28S rRNA (3773-MER)

Nearby chains

Chain LR
60S ribosomal protein L19

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.4893 s