HL_8QOI_050

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8QOI|1|L5|A|3642, 8QOI|1|L5|A|3643, 8QOI|1|L5|U|3644, 8QOI|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_050 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2985

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8QOI|1|L5|G|3638
8QOI|1|L5|PSU|3639
8QOI|1|L5|U|3640
8QOI|1|L5|U|3641
8QOI|1|L5|A|3642
8QOI|1|L5|A|3643
8QOI|1|L5|U|3644
8QOI|1|L5|U|3645
8QOI|1|L5|A|3646
8QOI|1|L5|A|3647
8QOI|1|L5|A|3648
8QOI|1|L5|A|3649
8QOI|1|L5|C|3650

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LP

60S ribosomal protein L17

Chain Lj

60S ribosomal protein L37