HL_8QOI_059
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- UCAAACGGUA(6MZ)CG
- Length
- 13 nucleotides
- Bulged bases
- 8QOI|1|L5|A|4214, 8QOI|1|L5|C|4221
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_059 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.1114
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8QOI|1|L5|U|4210
8QOI|1|L5|C|4211
8QOI|1|L5|A|4212
8QOI|1|L5|A|4213
8QOI|1|L5|A|4214
8QOI|1|L5|C|4215
8QOI|1|L5|G|4216
8QOI|1|L5|G|4217
8QOI|1|L5|U|4218
8QOI|1|L5|A|4219
8QOI|1|L5|6MZ|4220
8QOI|1|L5|C|4221
8QOI|1|L5|G|4222
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LI
- 60S ribosomal protein L10-like
- Chain LT
- 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
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