HL_8QOI_064
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- U(PSU)UGGGUUU(PSU)A
- Length
- 11 nucleotides
- Bulged bases
- 8QOI|1|L5|U|4354
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_064 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.5072
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8QOI|1|L5|U|4352
8QOI|1|L5|PSU|4353
8QOI|1|L5|U|4354
8QOI|1|L5|G|4355
8QOI|1|L5|G|4356
8QOI|1|L5|G|4357
8QOI|1|L5|U|4358
8QOI|1|L5|U|4359
8QOI|1|L5|U|4360
8QOI|1|L5|PSU|4361
8QOI|1|L5|A|4362
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LL
- 60S ribosomal protein L13
- Chain La
- Large ribosomal subunit protein uL15
- Chain Li
- 60S ribosomal protein L36
- Chain Lo
- 60S ribosomal protein L36a
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