HL_8QOI_065

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CGUUCA(PSU)AG

Length

9 nucleotides

Bulged bases

8QOI|1|L5|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_065 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.2755

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8QOI|1|L5|C|4417
8QOI|1|L5|G|4418
8QOI|1|L5|U|4419
8QOI|1|L5|U|4420
8QOI|1|L5|C|4421
8QOI|1|L5|A|4422
8QOI|1|L5|PSU|4423
8QOI|1|L5|A|4424
8QOI|1|L5|G|4425

Current chains

Chain L5

28S rRNA (3773-MER)

Nearby chains

Chain LI

60S ribosomal protein L10-like

Chain Lm

Ubiquitin-60S ribosomal protein L40