HL_8QOI_087

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8QOI|1|S2|C|324, 8QOI|1|S2|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_087 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2597

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8QOI|1|S2|C|322
8QOI|1|S2|C|323
8QOI|1|S2|C|324
8QOI|1|S2|C|325
8QOI|1|S2|C|326
8QOI|1|S2|G|327
8QOI|1|S2|U|328
8QOI|1|S2|G|329

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LW

60S ribosomal protein L24

Chain SG

40S ribosomal protein S6