HL_8QOI_123
3D structure
- PDB id
- 8QOI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.9 Å
Loop
- Sequence
- (PSU)UUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8QOI|1|L5|A|3642, 8QOI|1|L5|A|3643, 8QOI|1|L5|U|3644, 8QOI|1|L5|A|3648
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QOI_123 not in the Motif Atlas
- Homologous match to HL_8P9A_157
- Geometric discrepancy: 0.2082
- The information below is about HL_8P9A_157
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.1
- Basepair signature
- cWW-cWW-tWH-F-tWH-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8QOI|1|L5|PSU|3639
8QOI|1|L5|U|3640
8QOI|1|L5|U|3641
8QOI|1|L5|A|3642
8QOI|1|L5|A|3643
8QOI|1|L5|U|3644
8QOI|1|L5|U|3645
8QOI|1|L5|A|3646
8QOI|1|L5|A|3647
8QOI|1|L5|A|3648
8QOI|1|L5|A|3649
Current chains
- Chain L5
- 28S rRNA (3773-MER)
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain LP
- 60S ribosomal protein L17
- Chain Lj
- 60S ribosomal protein L37
Coloring options: