HL_8QOI_126

3D structure

PDB id

8QOI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.9 Å

Loop

Sequence

(OMC)CAAGG

Length

6 nucleotides

Bulged bases

8QOI|1|S2|A|464

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QOI_126 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.1339

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

8QOI|1|S2|OMC|462
8QOI|1|S2|C|463
8QOI|1|S2|A|464
8QOI|1|S2|A|465
8QOI|1|S2|G|466
8QOI|1|S2|G|467

Current chains

Chain S2

18S rRNA (1740-MER)

Nearby chains

Chain LV

60S ribosomal protein L23

Chain SG

40S ribosomal protein S6