HL_8QPP_039

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_039 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2648

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QPP|1|X|C|136
8QPP|1|X|G|137
8QPP|1|X|U|138
8QPP|1|X|A|139
8QPP|1|X|A|140
8QPP|1|X|U|141
8QPP|1|X|G|142
8QPP|1|X|G|143

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23