HL_8QPP_045

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8QPP|1|X|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_045 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1346

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8QPP|1|X|C|349
8QPP|1|X|U|350
8QPP|1|X|G|351
8QPP|1|X|G|352
8QPP|1|X|A|353
8QPP|1|X|A|354
8QPP|1|X|A|355
8QPP|1|X|G|356

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain t

Large ribosomal subunit protein uL24