HL_8QPP_062

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUAAGA

Length

8 nucleotides

Bulged bases

8QPP|1|X|U|1004, 8QPP|1|X|G|1007

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_062 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1908

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8QPP|1|X|U|1001
8QPP|1|X|G|1002
8QPP|1|X|A|1003
8QPP|1|X|U|1004
8QPP|1|X|A|1005
8QPP|1|X|A|1006
8QPP|1|X|G|1007
8QPP|1|X|A|1008

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain Y

5S ribosomal RNA; 5S rRNA

Chain j

Large ribosomal subunit protein uL16