HL_8QPP_072

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUGGAUA

Length

9 nucleotides

Bulged bases

8QPP|1|X|U|1500, 8QPP|1|X|U|1501

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_072 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.4295

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8QPP|1|X|U|1498
8QPP|1|X|A|1499
8QPP|1|X|U|1500
8QPP|1|X|U|1501
8QPP|1|X|G|1502
8QPP|1|X|G|1503
8QPP|1|X|A|1504
8QPP|1|X|U|1505
8QPP|1|X|A|1506

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein bL17