HL_8QPP_109

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAUUGGAUAUC

Length

12 nucleotides

Bulged bases

8QPP|1|X|U|1500, 8QPP|1|X|U|1501, 8QPP|1|X|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_109 not in the Motif Atlas

Geometric match to HL_8C3A_018

Geometric discrepancy: 0.3424

The information below is about HL_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

8QPP|1|X|G|1497
8QPP|1|X|U|1498
8QPP|1|X|A|1499
8QPP|1|X|U|1500
8QPP|1|X|U|1501
8QPP|1|X|G|1502
8QPP|1|X|G|1503
8QPP|1|X|A|1504
8QPP|1|X|U|1505
8QPP|1|X|A|1506
8QPP|1|X|U|1507
8QPP|1|X|C|1508

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain k

Large ribosomal subunit protein bL17