HL_8QPP_110

3D structure

PDB id

8QPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis MutS2-collided disome complex (stalled 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAGAGAAUC

Length

9 nucleotides

Bulged bases

8QPP|1|X|A|1679

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QPP_110 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.2434

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QPP|1|X|G|1674
8QPP|1|X|A|1675
8QPP|1|X|G|1676
8QPP|1|X|A|1677
8QPP|1|X|G|1678
8QPP|1|X|A|1679
8QPP|1|X|A|1680
8QPP|1|X|U|1681
8QPP|1|X|C|1682

Current chains

Chain X

23S ribosomal RNA

Nearby chains