HL_8QRK_001
3D structure
- PDB id
- 8QRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.69 Å
Loop
- Sequence
- UUUGGUCCUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QRK_001 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.1333
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_73535.2
- Basepair signature
- cWW-tHW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8QRK|1|A|U|654
8QRK|1|A|U|655
8QRK|1|A|U|656
8QRK|1|A|G|657
8QRK|1|A|G|658
8QRK|1|A|U|659
8QRK|1|A|C|660
8QRK|1|A|C|661
8QRK|1|A|U|662
8QRK|1|A|A|663
8QRK|1|A|G|664
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain D
- 28S ribosomal protein S5, mitochondrial
Coloring options: