8QRK Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8QRK_001 | No text annotation | ||
| HL_8QRK_002 | No text annotation | ||
| HL_8QRK_003 | Pseudoknot geometry | ||
| HL_8QRK_004 | GNRA | ||
| HL_8QRK_005 | No text annotation | ||
| HL_8QRK_006 | No text annotation | ||
| HL_8QRK_007 | GNRA | ||
| HL_8QRK_008 | GNRA | ||
| HL_8QRK_009 | No text annotation | ||
| HL_8QRK_010 | GNRA | ||
| HL_8QRK_011 | No text annotation | ||
| HL_8QRK_012 | Externally structured | ||
| HL_8QRK_013 | No text annotation | ||
| HL_8QRK_014 | No text annotation | ||
| HL_8QRK_015 | No text annotation | ||
| HL_8QRK_016 | Externally structured | ||
| HL_8QRK_017 | No text annotation | ||
| HL_8QRK_018 | T-loop with 2 bulged bases not stacked | ||
| HL_8QRK_019 | No text annotation | ||
| HL_8QRK_020 | No text annotation | ||
| HL_8QRK_021 | GNRA |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8QRK_001 | No text annotation | ||
| IL_8QRK_002 | Isolated tHS basepair with bulges | ||
| IL_8QRK_003 | Single bulged A | ||
| IL_8QRK_004 | Single bulged A | ||
| IL_8QRK_005 | Minor groove platform | ||
| IL_8QRK_006 | Minor groove platform with extra cWW | ||
| IL_8QRK_007 | Minor groove platform with extra cWW | ||
| IL_8QRK_008 | Kink-turn with non-sequential stacking | ||
| IL_8QRK_009 | Major groove platform; stack outside cWW | ||
| IL_8QRK_047 | No text annotation | ||
| IL_8QRK_010 | No text annotation | ||
| IL_8QRK_011 | Single bulged U | ||
| IL_8QRK_012 | C-loop | ||
| IL_8QRK_013 | Single bulged A | ||
| IL_8QRK_014 | No text annotation | ||
| IL_8QRK_015 | Kink-turn related | ||
| IL_8QRK_016 | No text annotation | ||
| IL_8QRK_017 | UAA/GAN | ||
| IL_8QRK_048 | No text annotation | ||
| IL_8QRK_018 | No text annotation | ||
| IL_8QRK_019 | Isolated non-canonical cWW pair | ||
| IL_8QRK_020 | No text annotation | ||
| IL_8QRK_021 | Other IL | ||
| IL_8QRK_022 | Left turn | ||
| IL_8QRK_023 | tSH-tHW-tHS | ||
| IL_8QRK_024 | Isolated non-canonical cWW pair | ||
| IL_8QRK_025 | No text annotation | ||
| IL_8QRK_026 | Single bulged A | ||
| IL_8QRK_027 | Single bulged G | ||
| IL_8QRK_028 | C-loop | ||
| IL_8QRK_029 | Minor groove platform | ||
| IL_8QRK_030 | No text annotation | ||
| IL_8QRK_031 | Single bulged U | ||
| IL_8QRK_032 | Isolated cWS basepair | ||
| IL_8QRK_033 | Minor groove platform | ||
| IL_8QRK_034 | Single bulged A | ||
| IL_8QRK_035 | Isolated non-canonical cWW pair | ||
| IL_8QRK_036 | Double sheared | ||
| IL_8QRK_037 | No text annotation | ||
| IL_8QRK_038 | No text annotation | ||
| IL_8QRK_039 | No text annotation | ||
| IL_8QRK_049 | No text annotation | ||
| IL_8QRK_040 | No text annotation | ||
| IL_8QRK_041 | Isolated non-canonical cWW pair | ||
| IL_8QRK_042 | No text annotation | ||
| IL_8QRK_043 | No text annotation | ||
| IL_8QRK_044 | Tandem non-canonical cWW pairs | ||
| IL_8QRK_045 | No text annotation | ||
| IL_8QRK_046 | No text annotation | ||
| IL_8QRK_051 | No text annotation | ||
| IL_8QRK_050 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8QRK_001 | No text annotation | ||
| J3_8QRK_002 | No text annotation | ||
| J3_8QRK_008 | No text annotation | ||
| J3_8QRK_003 | No text annotation | ||
| J3_8QRK_004 | No text annotation | ||
| J3_8QRK_005 | No text annotation | ||
| J3_8QRK_006 | No text annotation | ||
| J3_8QRK_009 | No text annotation | ||
| J3_8QRK_007 | No text annotation | ||
| J4_8QRK_001 | No text annotation | ||
| J4_8QRK_002 | No text annotation | ||
| J4_8QRK_003 | No text annotation |
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