HL_8QRL_001

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

8QRL|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRL_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1346

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8QRL|1|A|U|654
8QRL|1|A|U|655
8QRL|1|A|U|656
8QRL|1|A|G|657
8QRL|1|A|G|658
8QRL|1|A|U|659
8QRL|1|A|C|660
8QRL|1|A|C|661
8QRL|1|A|U|662
8QRL|1|A|A|663
8QRL|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial