8QRL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8QRL_001 | 1/A/654:664 | No text annotation | homologous HL_4LFB_001 HL_73535.1 | |
| HL_8QRL_005 | 1/A/792:796 | No text annotation | geometric HL_6U8D_003 HL_32346.6 | |
| HL_8QRL_013 | 1/A/1150:1155 | Mini UNCG | geometric HL_6TQB_001 HL_12626.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8QRL_002 | No text annotation | ||
| HL_8QRL_003 | No text annotation | ||
| HL_8QRL_004 | GNRA | ||
| HL_8QRL_006 | No text annotation | ||
| HL_8QRL_007 | GNRA | ||
| HL_8QRL_008 | GNRA | ||
| HL_8QRL_009 | No text annotation | ||
| HL_8QRL_010 | GNRA | ||
| HL_8QRL_011 | No text annotation | ||
| HL_8QRL_012 | No text annotation | ||
| HL_8QRL_014 | No text annotation | ||
| HL_8QRL_015 | No text annotation | ||
| HL_8QRL_016 | No text annotation | ||
| HL_8QRL_017 | No text annotation | ||
| HL_8QRL_018 | T-loop with 2 bulged bases not stacked | ||
| HL_8QRL_019 | No text annotation | ||
| HL_8QRL_020 | No text annotation | ||
| HL_8QRL_021 | GNRA |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8QRL_001 | 1/A/649:651, 1/A/667:668 | No text annotation | ||
| IL_8QRL_002 | 1/A/674:676, 1/A/921:923 | No text annotation | geometric IL_1NBS_006 NA | |
| IL_8QRL_008 | 1/A/756:761, 1/A/779:786 | Kink-turn with non-sequential stacking | geometric IL_4LFB_011 IL_46174.4 | |
| IL_8QRL_011 | 1/A/830:832, 1/A/855:856 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_8QRL_013 | 1/A/838:839, 1/A/850:852 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_8QRL_016 | 1/A/935:941, 1/A/1133:1134 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8QRL_017 | 1/A/946:950, 1/A/1044:1049 | UAA/GAN | geometric IL_5TBW_063 NA | |
| IL_8QRL_049 | 1/A/952:968, 1/A/1036:1042 | No text annotation | ||
| IL_8QRL_021 | 1/A/1020:1022, 1/A/1029:1030 | Other IL | geometric IL_3WBM_004 IL_18188.1 | |
| IL_8QRL_024 | 1/A/1109:1111, 1/A/1130:1132 | Isolated non-canonical cWW pair | geometric IL_1Z7F_002 NA | |
| IL_8QRL_025 | 1/A/1139:1147, 1/A/1158:1164 | No text annotation | ||
| IL_8QRL_050 | 1/A/1485:1488, 1/A/1562:1566 | No text annotation | geometric IL_8CRE_467 IL_25873.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8QRL_003 | Single bulged A | ||
| IL_8QRL_004 | Single bulged A | ||
| IL_8QRL_005 | Minor groove platform | ||
| IL_8QRL_006 | Minor groove platform with extra cWW | ||
| IL_8QRL_007 | Minor groove platform with extra cWW | ||
| IL_8QRL_009 | Major groove platform; stack outside cWW | ||
| IL_8QRL_048 | No text annotation | ||
| IL_8QRL_010 | No text annotation | ||
| IL_8QRL_012 | C-loop | ||
| IL_8QRL_014 | No text annotation | ||
| IL_8QRL_015 | Kink-turn related | ||
| IL_8QRL_018 | No text annotation | ||
| IL_8QRL_019 | Isolated non-canonical cWW pair | ||
| IL_8QRL_020 | No text annotation | ||
| IL_8QRL_022 | Left turn | ||
| IL_8QRL_023 | tSH-tHW-tHS | ||
| IL_8QRL_026 | Single bulged A | ||
| IL_8QRL_027 | Single bulged G | ||
| IL_8QRL_028 | C-loop | ||
| IL_8QRL_029 | Minor groove platform | ||
| IL_8QRL_030 | No text annotation | ||
| IL_8QRL_031 | Single bulged U | ||
| IL_8QRL_032 | Isolated cWS basepair | ||
| IL_8QRL_033 | Minor groove platform | ||
| IL_8QRL_034 | Single bulged A | ||
| IL_8QRL_035 | Isolated non-canonical cWW pair | ||
| IL_8QRL_036 | Tandem non-canonical cWW pairs | ||
| IL_8QRL_037 | No text annotation | ||
| IL_8QRL_038 | No text annotation | ||
| IL_8QRL_039 | No text annotation | ||
| IL_8QRL_040 | No text annotation | ||
| IL_8QRL_041 | Isolated non-canonical cWW pair | ||
| IL_8QRL_042 | No text annotation | ||
| IL_8QRL_043 | No text annotation | ||
| IL_8QRL_044 | Tandem non-canonical cWW pairs | ||
| IL_8QRL_045 | Single bulged C | ||
| IL_8QRL_046 | No text annotation | ||
| IL_8QRL_047 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8QRL_002 | 1/A/687:690, 1/A/823:830, 1/A/856:858 | No text annotation | ||
| J4_8QRL_002 | 1/A/717:724, 1/A/750:753, 1/A/789:791, 1/A/797:798 | No text annotation | ||
| J4_8QRL_003 | 1/A/941:943, 1/A/1052:1057, 1/A/1098:1109, 1/A/1132:1133 | No text annotation | homologous J4_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8QRL_001 | No text annotation | ||
| J3_8QRL_008 | No text annotation | ||
| J3_8QRL_003 | No text annotation | ||
| J3_8QRL_004 | No text annotation | ||
| J3_8QRL_005 | No text annotation | ||
| J3_8QRL_009 | No text annotation | ||
| J3_8QRL_006 | No text annotation | ||
| J3_8QRL_010 | No text annotation | ||
| J3_8QRL_007 | No text annotation | ||
| J4_8QRL_001 | No text annotation |
Coloring options: