HL_8QRL_015

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

8QRL|1|A|A|1283, 8QRL|1|A|U|1284

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRL_015 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2267

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

8QRL|1|A|U|1281
8QRL|1|A|G|1282
8QRL|1|A|A|1283
8QRL|1|A|U|1284
8QRL|1|A|G|1285
8QRL|1|A|A|1286
8QRL|1|A|A|1287

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain B

28S ribosomal protein S2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial