HL_8QRL_020

3D structure

PDB id

8QRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.34 Å

Loop

Sequence

UAACUAA

Length

7 nucleotides

Bulged bases

8QRL|1|A|C|1525, 8QRL|1|A|U|1526

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRL_020 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2585

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8QRL|1|A|U|1522
8QRL|1|A|A|1523
8QRL|1|A|A|1524
8QRL|1|A|C|1525
8QRL|1|A|U|1526
8QRL|1|A|A|1527
8QRL|1|A|A|1528

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 0

28S ribosomal protein S34, mitochondrial

Chain V

28S ribosomal protein S27, mitochondrial