HL_8QRM_001

3D structure

PDB id

8QRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU assembly intermediate in GTPBP8 knock-out cells, state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRM_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1332

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8QRM|1|A|U|654
8QRM|1|A|U|655
8QRM|1|A|U|656
8QRM|1|A|G|657
8QRM|1|A|G|658
8QRM|1|A|U|659
8QRM|1|A|C|660
8QRM|1|A|C|661
8QRM|1|A|U|662
8QRM|1|A|A|663
8QRM|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial