HL_8QRN_002
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GCC(RSQ)AUACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: RSQ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QRN_002 not in the Motif Atlas
- Geometric match to HL_6UFM_002
- Geometric discrepancy: 0.1367
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8QRN|1|5|G|31
8QRN|1|5|C|32
8QRN|1|5|C|33
8QRN|1|5|RSQ|34
8QRN|1|5|A|35
8QRN|1|5|U|36
8QRN|1|5|A|37
8QRN|1|5|C|38
8QRN|1|5|C|39
Current chains
- Chain 5
- fMet-tRNAMet
Nearby chains
- Chain 6
- mRNA
- Chain 7
- Translation initiation factor IF-2, mitochondrial
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- 28S ribosomal protein S9, mitochondrial
Coloring options: