HL_8QRN_003

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

GUUAUACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRN_003 not in the Motif Atlas

Geometric match to HL_4V9F_010

Geometric discrepancy: 0.3787

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

8QRN|1|5|G|53
8QRN|1|5|U|54
8QRN|1|5|U|55
8QRN|1|5|A|56
8QRN|1|5|U|57
8QRN|1|5|A|58
8QRN|1|5|C|60
8QRN|1|5|C|61

Current chains

Chain 5

fMet-tRNAMet

Nearby chains