HL_8QRN_015
3D structure
- PDB id
- 8QRN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mt-SSU in GTPBP8 knock-out cells, state 4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- UAAAUCAACAAA
- Length
- 12 nucleotides
- Bulged bases
- 8QRN|1|A|A|1118, 8QRN|1|A|A|1125
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8QRN_015 not in the Motif Atlas
- Geometric match to HL_5TBW_022
- Geometric discrepancy: 0.3277
- The information below is about HL_5TBW_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8QRN|1|A|U|1115
8QRN|1|A|A|1116
8QRN|1|A|A|1117
8QRN|1|A|A|1118
8QRN|1|A|U|1119
8QRN|1|A|C|1120
8QRN|1|A|A|1121
8QRN|1|A|A|1122
8QRN|1|A|C|1123
8QRN|1|A|A|1124
8QRN|1|A|A|1125
8QRN|1|A|A|1126
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 2
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1
- Chain B
- 28S ribosomal protein S2, mitochondrial
- Chain D
- 28S ribosomal protein S5, mitochondrial
- Chain E
- 28S ribosomal protein S6, mitochondrial
- Chain S
- 28S ribosomal protein S23, mitochondrial
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