HL_8QRN_020

3D structure

PDB id

8QRN (explore in PDB, NAKB, or RNA 3D Hub)

Description

mt-SSU in GTPBP8 knock-out cells, state 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

8QRN|1|A|C|1377, 8QRN|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QRN_020 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1319

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8QRN|1|A|U|1373
8QRN|1|A|A|1374
8QRN|1|A|C|1375
8QRN|1|A|C|1376
8QRN|1|A|C|1377
8QRN|1|A|C|1378
8QRN|1|A|A|1379

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain G

28S ribosomal protein S9, mitochondrial

Chain X

28S ribosomal protein S29, mitochondrial