3D structure

PDB id
8QSJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7
Experimental method
ELECTRON MICROSCOPY
Resolution
3 Å

Loop

Sequence
UUCUGCAUAA
Length
10 nucleotides
Bulged bases
8QSJ|1|A|A|1855
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8QSJ_005 not in the Motif Atlas
Geometric match to HL_4FRN_005
Geometric discrepancy: 0.2069
The information below is about HL_4FRN_005
Detailed Annotation
T-loop with 2 bulged bases not stacked
Broad Annotation
T-loop
Motif group
HL_01609.3
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
18

Unit IDs

8QSJ|1|A|U|1847
8QSJ|1|A|U|1848
8QSJ|1|A|C|1849
8QSJ|1|A|U|1850
8QSJ|1|A|G|1851
8QSJ|1|A|C|1852
8QSJ|1|A|A|1853
8QSJ|1|A|U|1854
8QSJ|1|A|A|1855
8QSJ|1|A|A|1856

Current chains

Chain A
16S rRNA

Nearby chains

Chain 0
39S ribosomal protein L32, mitochondrial
Chain M
39S ribosomal protein L15, mitochondrial
Chain R
39S ribosomal protein L20, mitochondrial
Chain S
39S ribosomal protein L21, mitochondrial
Chain o
Ribosomal protein 63, mitochondrial

Coloring options:


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