HL_8QSJ_026

3D structure

PDB id

8QSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitoribosomal large subunit assembly intermediate 2 with GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGGGCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8QSJ_026 not in the Motif Atlas

Geometric match to HL_6MWN_004

Geometric discrepancy: 0.2568

The information below is about HL_6MWN_004

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8QSJ|1|A|U|2813
8QSJ|1|A|G|2814
8QSJ|1|A|G|2815
8QSJ|1|A|G|2816
8QSJ|1|A|G|2817
8QSJ|1|A|C|2818
8QSJ|1|A|G|2819

Current chains

Chain A

16S rRNA

Nearby chains

Chain x

5-methylcytosine rRNA methyltransferase NSUN4